PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3631s0002.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Trihelix
Protein Properties Length: 313aa    MW: 34823 Da    PI: 7.9197
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3631s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.96.4e-1451139186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkr..tsessstcpyfdqle 86 
                          +W+++ + +Li+a  e+  +l+rg+lk+ +W+ev++ + r+    ++ +qCk++++ ++k++k++k+    +   ++  s++ +f++l+
  Cagra.3631s0002.1.p  51 CWSEEATETLINAWGERFLKLKRGNLKQEHWKEVAEIVnRDNETAKTDTQCKNRIDTVKKKFKQEKAKIAAGgcDEDCNSKWIFFEKLQ 139
                          7*************************************888899**********************998888444566789*****997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.7E-2250140No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEEDDGTQSH PSSGDPSTAK SCARGGLAIV VSPPSKAASG RRTGGGGRDD CWSEEATETL  60
INAWGERFLK LKRGNLKQEH WKEVAEIVNR DNETAKTDTQ CKNRIDTVKK KFKQEKAKIA  120
AGGCDEDCNS KWIFFEKLQH LIGGATTASK ALKVTPLSSR SNLYQRQAKS FSTGVKRSGG  180
GDSTRWHFRK RVASETESES EPDLSADSVD SLPQPLLLPL PVDVDNKTEP GEVAMAILGF  240
AESYEKVETL KLKQMVELER ERMKFVKELE LQRMQFFTAQ LEMLRNSLED REGERRIRSH  300
HNHSVNNNGN VS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299620.10.0hypothetical protein CARUB_v10015798mg, partial
SwissprotQ9SYG21e-80ASIL1_ARATH; Trihelix transcription factor ASIL1
TrEMBLR0I7T60.0R0I7T6_9BRAS; Uncharacterized protein (Fragment)
STRINGAT1G54060.13e-78(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89101637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54060.13e-716B-interacting protein 1-like 1